neurots.extract_input.from_TMD¶
Extracts the distributions associated with TMD module.
Functions
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Add the persistent homology extracted from a population of apicals to the distr dictionary. |
- neurots.extract_input.from_TMD.persistent_homology_angles(pop, threshold=2, neurite_type='basal_dendrite', feature='radial_distances')¶
Add the persistent homology extracted from a population of apicals to the distr dictionary.
Each tree in the population is associated with a persistence barcode (diagram) and a set of angles that will be used as input for synthesis.
- Parameters:
pop (neurom.core.population.Population) – The given population.
threshold (int) – The minimum number of terminations.
neurite_type (neurom.core.types.NeuriteType) – Consider only the neurites of this type.
feature (str) – Use the specified TMD feature.