neurots.extract_input.from_TMD

Extracts the distributions associated with TMD module.

Functions

persistent_homology_angles(pop[, threshold, ...])

Add the persistent homology extracted from a population of apicals to the distr dictionary.

neurots.extract_input.from_TMD.persistent_homology_angles(pop, threshold=2, neurite_type='basal_dendrite', feature='radial_distances')

Add the persistent homology extracted from a population of apicals to the distr dictionary.

Each tree in the population is associated with a persistence barcode (diagram) and a set of angles that will be used as input for synthesis.

Parameters:

• pop (neurom.core.population.Population) – The given population.

• threshold (int) – The minimum number of terminations.

• neurite_type (neurom.core.types.NeuriteType) – Consider only the neurites of this type.

• feature (str) – Use the specified TMD feature.